Fail early
Have a look at the article in Chemical and Engineering News "Drug
Discovery - Filtering Out Failures Early in the Game", June5, 2000 C&EN
page 63. This article is not availabe on the Internet, but more
recent ones very similar to it. Search Google with "Drug Discovery -
Filtering Out Failures Early in the Game".
This articles gives a pretty good overview about the different efforts of
drug and software companies to develop methods to weed out early the "false
negatives". "These are drug candidates that give no hint of having
undesirable qualities until they are in the final stages of testing, when
they're found out to have safety issues."
At Pfizer, some of the primary reasons for attrition of drug candidates are
safety, pharmacology and poor ADME characteristics.
The ratios are shown below:
In terms of poor ADME characteristics, clearance is the dominant cause of
attrition; the ratios documented at Pfizer are: poor absorption-20%, poor
clearance-64% and poor distribution-16%.
Historically (before 1995), attrition of new chemical entities due to
pharmacokinetics was almost 20%. Recently, from 1997 to 2001,
pharmacokinetic-related attrition was slightly over 10%. This decrease has been
attributed to better screening and identification of drug
metabolism problems earlier in the discovery process.
from: Influencing Chemists to Minimize Attrition,Jae
Lee, Pfizer Inc. - 2002
The methods that are mainly
used for ADMET
databases:
and in silico methods:
Here are the features of some databases:
Toxicity
|
Metabolite
|
Reaxys
|
Data from 1902 onwards from the
RTECS database includes journal abstracts, U.S. federal standards and
regulations, government reports, and unpublished EPA test submissions. |
Data from original literature
covering 1901 onwards abstracted from: Biotransformation von
Arzeneimitteln (S. Pfeifer and H. Borchert ed. ) published 1977-1983; Pharmacokinetics
(S. Pfeifer and H. Borchert ed.) published 1986 -1990; ongoing
semiannual updates 1991 - present from 49 leading journals and FDA NDAs. |
The
Reaxys database alsocontains pharmacological, toxicological and ecological data. |
Toxicity data in six categories:
- acute toxicity
- mutagenicity
- skin/eye irritation
- tumorigenicity and carcinogenicity
- reproductive effects
- and multiple dose effects
|
Graphically searchable
biotransformations and metabolic schemes from in vivo and in
vitro studies. Includes information on
- enzymes
- species
- route
of administration
- excretion
- bioavailability
- analytical methods
- conjugation reactions
- compound class
- physiological activity
- CAS
Registry numbers.
|
Beilstein covers the
following data:
- Pharmacological Data
- Ecological Data
- Ecotoxicology
- Exposure
- Exposure assessment
- Concentration in the environment
- Mobility (spread in the environment)
- Transport and Distribution
- Bioaccumulation
- Biomagnification
- Biomonitoring
- Reactivity (Transformation)
- Biodegradation
- Abiotic Degradation, Hydrolysis
- Abiotic Degradation, Photolysis
- Stability in Soil
- Oxygen Demand
- Use
|
Data is abstracted from over 2,950 worldwide sources, including: scientific
journals, conference proceedings, symposia reports, reviews, and more. Covers
presently 145,035 compounds. |
Covers over 7,900 parent compounds
-including drugs, agrochemicals, industrial chemicals and environmental
contaminants. |
EcoPharm adds more than 145'000
records per year from 180 key journals. |
Links to chemical structures
included in the Metabolite database, and access to original journal
articles (through LitLink/Standard or LitLink/Pro Server). |
Links to chemical structures
included in the Toxicity database, and access to original journal articles
(through LitLink/Standard or LitLink/Pro Server). |
Access to original journal
articles (through LitLink/Standard or LitLink/Pro Server). |
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